Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ubox5U-box domain containing 5. (573 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 0.972
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.886
yod1
YOD1 deubiquitinase.
    
 
 0.875
avpr1a
Arginine vasopressin receptor 1A.
    
  0.859
ENSPNAP00000023416
Si:dkey-178o16.4.
    
  0.859
LOC108428150
Arginine vasopressin receptor 1Ab.
    
  0.859
mavs
CARD_2 domain-containing protein.
      
 0.846
ptpra
Receptor-type tyrosine-protein phosphatase.
      
 0.846
mlh1
MutL homolog 1, colon cancer, nonpolyposis type 2 (E. coli).
  
   0.837
psmd4
Proteasome 26S subunit, non-ATPase 4a.
    
 
 0.827
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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