Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108425912Vascular endothelial zinc finger 1b. (481 aa)    
Predicted Functional Partners:
znf827
Zinc finger protein 827.
  
   
 0.561
mysm1
Myb-like, SWIRM and MPN domains 1.
    
  0.550
LOC108412904
Uncharacterized protein.
    
  0.541
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
     
  0.504
rnf4
Ring finger protein 4.
    
 
 0.498
nisch
Nischarin.
      
 0.495
LOC108423915
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.459
pagr1
PAXIP1 associated glutamate-rich protein 1.
      
 0.457
dclre1b
DNA cross-link repair 1B.
    
 
 0.450
RBPMS
RNA binding protein, mRNA processing factor.
    
   0.442
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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