Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108432572Nescient helix loop helix 2. (125 aa)    
Predicted Functional Partners:
TCF4
Transcription factor 4.
    
 0.733
LOC108430108
Transcription factor 3b.
    
 0.733
LOC108428361
BHLH domain-containing protein.
    
 0.733
LOC108427154
Transcription factor 3a.
    
 0.733
tcf12
Transcription factor 12.
    
 0.733
gabpa
GA binding protein transcription factor subunit alpha.
    
 0.592
gdap2
Ganglioside induced differentiation associated protein 2.
      
 0.581
LOC108435115
Inhibitor of DNA binding 1, HLH protein.
    
 0.525
id1
BHLH domain-containing protein.
    
 0.525
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.508
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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