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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108426472Si:ch211-214e3.5. (1439 aa)    
Predicted Functional Partners:
wdr5
WD repeat domain 5.
    
  0.583
LOC108423687
WD_REPEATS_REGION domain-containing protein.
    
  0.583
mcrs1
Microspherule protein 1.
    
  0.576
LOC108412904
Uncharacterized protein.
    
  0.525
LOC108423915
NME/NM23 family member 8; Belongs to the NDK family.
    
 0.482
bard1
BRCA1 associated RING domain 1.
    
  0.435
ak9
Adenylate kinase 9.
    
  0.433
bap1
Ubiquitin carboxyl-terminal hydrolase.
    
  0.426
YTHDC2
YTH domain containing 2.
   
  0.407
LOC108436970
SUZ12 polycomb repressive complex 2 subunit a.
   
 0.407
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.