LOC108425263 protein (Pygocentrus nattereri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC108425263

Protein tyrosine phosphatase, non-receptor type 23, b. (1358 aa)

Predicted Functional Partners:

tm9sf1

0.989

LOC108414620

0.984

chmp4c

0.984

LOC108433697

0.984

mdp1

0.965

stam2

0.932

stam

0.922

grap2

0.837

LOC108430010

0.837

LOC108432081

0.829

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108414620	LOC108425263	ENSPNAP00000015155	ENSPNAP00000001393	Charged multivesicular body protein 4Bb.	Protein tyrosine phosphatase, non-receptor type 23, b.	0.984
LOC108414620	LOC108433697	ENSPNAP00000015155	ENSPNAP00000026571	Charged multivesicular body protein 4Bb.	Charged multivesicular body protein 4Ba.	0.882
LOC108414620	chmp4c	ENSPNAP00000015155	ENSPNAP00000025222	Charged multivesicular body protein 4Bb.	Charged multivesicular body protein 4C.	0.872
LOC108414620	mdp1	ENSPNAP00000015155	ENSPNAP00000018651	Charged multivesicular body protein 4Bb.	Si:dkeyp-27c8.2.	0.800
LOC108414620	tm9sf1	ENSPNAP00000015155	ENSPNAP00000036654	Charged multivesicular body protein 4Bb.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.520
LOC108425263	LOC108414620	ENSPNAP00000001393	ENSPNAP00000015155	Protein tyrosine phosphatase, non-receptor type 23, b.	Charged multivesicular body protein 4Bb.	0.984
LOC108425263	LOC108430010	ENSPNAP00000001393	ENSPNAP00000034742	Protein tyrosine phosphatase, non-receptor type 23, b.	GRB2 related adaptor protein 2b.	0.837
LOC108425263	LOC108432081	ENSPNAP00000001393	ENSPNAP00000001363	Protein tyrosine phosphatase, non-receptor type 23, b.	Growth factor receptor-bound protein 2b.	0.829
LOC108425263	LOC108433697	ENSPNAP00000001393	ENSPNAP00000026571	Protein tyrosine phosphatase, non-receptor type 23, b.	Charged multivesicular body protein 4Ba.	0.984
LOC108425263	chmp4c	ENSPNAP00000001393	ENSPNAP00000025222	Protein tyrosine phosphatase, non-receptor type 23, b.	Charged multivesicular body protein 4C.	0.984
LOC108425263	grap2	ENSPNAP00000001393	ENSPNAP00000019459	Protein tyrosine phosphatase, non-receptor type 23, b.	GRB2 related adaptor protein 2a.	0.837
LOC108425263	mdp1	ENSPNAP00000001393	ENSPNAP00000018651	Protein tyrosine phosphatase, non-receptor type 23, b.	Si:dkeyp-27c8.2.	0.965
LOC108425263	stam	ENSPNAP00000001393	ENSPNAP00000019826	Protein tyrosine phosphatase, non-receptor type 23, b.	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.	0.922
LOC108425263	stam2	ENSPNAP00000001393	ENSPNAP00000020198	Protein tyrosine phosphatase, non-receptor type 23, b.	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.	0.932
LOC108425263	tm9sf1	ENSPNAP00000001393	ENSPNAP00000036654	Protein tyrosine phosphatase, non-receptor type 23, b.	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family.	0.989
LOC108430010	LOC108425263	ENSPNAP00000034742	ENSPNAP00000001393	GRB2 related adaptor protein 2b.	Protein tyrosine phosphatase, non-receptor type 23, b.	0.837
LOC108430010	LOC108432081	ENSPNAP00000034742	ENSPNAP00000001363	GRB2 related adaptor protein 2b.	Growth factor receptor-bound protein 2b.	0.780
LOC108430010	stam	ENSPNAP00000034742	ENSPNAP00000019826	GRB2 related adaptor protein 2b.	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.	0.603
LOC108430010	stam2	ENSPNAP00000034742	ENSPNAP00000020198	GRB2 related adaptor protein 2b.	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.	0.603
LOC108432081	LOC108425263	ENSPNAP00000001363	ENSPNAP00000001393	Growth factor receptor-bound protein 2b.	Protein tyrosine phosphatase, non-receptor type 23, b.	0.829