Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108442250Leucine-rich repeat, immunoglobulin-like and transmembrane domains 1a. (642 aa)    
Predicted Functional Partners:
LOC108412904
Uncharacterized protein.
    
  0.923
wdr90
WD repeat domain 90.
    
  0.818
ntng1
Netrin g1a.
    
 0.787
ENSPNAP00000014753
Vav 3 guanine nucleotide exchange factor b.
    
 0.787
ripk4
Receptor-interacting serine-threonine kinase 4.
    
 0.744
traf7
TNF receptor-associated factor 7.
    
 0.743
homez
Homeobox and leucine zipper encoding a.
    
 0.734
LOC108437313
FERM and PDZ domain containing 2.
    
 0.725
mansc4
MANSC domain-containing protein.
    
 
 0.704
LOC108442258
Leucine-rich repeat, immunoglobulin-like and transmembrane domains 2.
   
 0.698
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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