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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108432079Bromodomain PHD finger transcription factor. (2942 aa)    
Predicted Functional Partners:
LOC108444277
Uncharacterized protein.
   
 
 0.853
SMARCA5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 
 0.853
LOC108438657
Retinoblastoma binding protein 4, like.
    
 
 0.779
rbbp4
Retinoblastoma binding protein 4.
    
 
 0.779
SETD2
Uncharacterized protein.
   
 
 0.732
LOC108410880
PHD finger protein 3.
   
   
0.706
LOC108433243
Remodeling and spacing factor 1b, tandem duplicate 1.
   
 
 0.703
RSF1
Remodeling and spacing factor 1.
   
 
 0.703
USP34
Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.
   
    0.694
hells
Helicase, lymphoid specific.
    
 
 0.688
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.