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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108432568Peptidase S1 domain-containing protein. (259 aa)    
Predicted Functional Partners:
LOC108425079
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
  0.786
LOC108411703
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
  0.786
LOC108441697
Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family.
    
 0.785
parp1
Poly [ADP-ribose] polymerase.
   
  0.776
lmnb1
Lamin B1; Belongs to the intermediate filament family.
    
 0.773
LOC108439631
Lamin L3; Belongs to the intermediate filament family.
    
 0.773
lmnb2
Lamin B2; Belongs to the intermediate filament family.
    
 0.773
parp3
Poly [ADP-ribose] polymerase.
   
 
  0.768
parp2
Poly [ADP-ribose] polymerase.
   
 
  0.768
LOC108424231
BH3 interacting domain death agonist.
     
 0.765
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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