Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rabl3RAB, member of RAS oncogene family-like 3. (233 aa)    
Predicted Functional Partners:
rabggta
Rab geranylgeranyltransferase subunit alpha.
      
 0.846
LOC108431484
G protein-coupled receptor 89B.
    
 
 0.823
hspa9
Heat shock protein 9; Belongs to the heat shock protein 70 family.
  
 0.798
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
   
 
 0.786
rab24
RAB24, member RAS oncogene family.
      
 0.764
LOC108423915
NME/NM23 family member 8; Belongs to the NDK family.
  
 0.735
rab3gap1
RAB3 GTPase activating protein subunit 1.
      
 0.720
LOC108424063
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 
 0.710
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 
 0.710
gpn3
GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.
   
  
 0.705
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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