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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rabl3RAB, member of RAS oncogene family-like 3. (233 aa)    
Predicted Functional Partners:
hspa9
Heat shock protein 9; Belongs to the heat shock protein 70 family.
  
 0.714
hspa4l
Heat shock protein 4 like.
  
 0.686
LOC108429417
Heat shock protein 4a.
  
 0.686
hsph1
Heat shock 105/110 protein 1.
  
 0.686
LOC108430974
Heat shock protein 4b.
  
 0.686
flcn
Folliculin.
    
 0.661
rbbp5
Retinoblastoma binding protein 5.
    
 0.655
rabggta
Rab geranylgeranyltransferase subunit alpha.
      
 0.653
sod2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
 0.646
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.645
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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