Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnf40E3 ubiquitin protein ligase. (1003 aa)    
Predicted Functional Partners:
cdc73
Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).
   
 0.940
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.938
wac
WW domain containing adaptor with coiled-coil a.
   
 0.934
LOC108430168
WW domain-containing protein.
   
 0.934
SETD2
Uncharacterized protein.
   
 
 0.928
rps27a
Ribosomal protein S27a.
    
 0.912
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.911
ENSPNAP00000017949
Uncharacterized protein.
   
 0.911
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.891
ube2b
Ubiquitin-conjugating enzyme E2B (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family.
    
 0.888
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.