Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tmem170bTransmembrane protein 170B. (157 aa)    
Predicted Functional Partners:
tmem98
Transmembrane protein 98.
      
 0.692
ndc1
NDC1 transmembrane nucleoporin.
      
 0.607
TMEM158
Transmembrane protein 158 (gene/pseudogene).
      
 0.607
mfsd13a
Major facilitator superfamily domain containing 13A.
      
 0.605
kiaa1109
Si:ch211-233a24.2.
    
   0.576
cunh1orf43
Zgc:123238.
    
   0.576
LOC108442097
Transmembrane protein 88 a.
      
 0.555
vstm4
V-set and transmembrane domain containing 4a.
      
 0.543
LOC108437315
V-set and transmembrane domain containing 4b.
      
 0.543
cfdp1
Craniofacial development protein 1; May play a role during embryogenesis.
      
 0.440
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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