Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spata7Spermatogenesis associated 7. (541 aa)    
Predicted Functional Partners:
LOC108426560
RPGR interacting protein 1.
    
 
 0.824
LOC108428940
Cytochrome b5 reductase 4.
    
   0.794
rpgr
Uncharacterized protein.
   
 
 0.779
LOC108425698
Retinitis pigmentosa GTPase regulator b.
   
 
 0.779
rd3
Retinal degeneration 3, GUCY2D regulator.
      
 0.768
spata17
Spermatogenesis associated 17.
      
 0.766
LOC108439383
Lecithin retinol acyltransferase b, tandem duplicate 2.
      
 0.763
nphp1
Nephronophthisis 1.
    
 
 0.752
lca5
Lebercilin LCA5.
      
 0.746
ttc8
Tetratricopeptide repeat domain 8.
   
  
 0.744
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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