Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC108430319Si:ch211-87m7.2. (484 aa)    
Predicted Functional Partners:
slc46a1
Solute carrier family 46 member 1.
     
 0.671
mfsd3
Major facilitator superfamily domain containing 3.
      
 0.642
psmc5
Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.
    
   0.581
c1qtnf5
C1q and TNF related 5.
     
 0.547
mfsd9
Major facilitator superfamily domain containing 9.
      
 0.525
trmt13
tRNA methyltransferase 13 homolog.
      
 0.459
smap1
Small ArfGAP 1.
      
 0.457
smap2
Small ArfGAP2.
      
 0.457
LOC108425179
Actin related protein 1, centractin.
   
  
 0.444
mfsd5
Major facilitator superfamily domain containing 5.
      
 0.441
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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