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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdk5rap3CDK5 regulatory subunit associated protein 3. (505 aa)    
Predicted Functional Partners:
DDRGK1
DDRGK domain containing 1.
    
 
 0.968
ufl1
UFM1-specific ligase 1.
   
 
 0.962
fkbp6
Peptidylprolyl isomerase.
    
   0.782
ufc1
Ubiquitin-fold modifier-conjugating enzyme 1; E2-like enzyme which forms an intermediate with UFM1 via a thioester linkage.
   
 
 0.666
ufsp2
Ufm1-specific peptidase 2.
   
  
 0.630
LOC108444262
Sorting nexin 11.
      
 0.613
uba5
Ubiquitin-like modifier activating enzyme 5.
      
 0.600
ufm1
Ubiquitin-fold modifier 1.
    
 
 0.558
cdk5
Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.
      
 0.549
ttll6
Tubulin tyrosine ligase-like family, member 6.
      
 0.529
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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