Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
fem1bFem-1 homolog b (C. elegans). (627 aa)    
Predicted Functional Partners:
COPS6
COP9 signalosome subunit 6.
    
 0.993
cul2
Cullin 2; Belongs to the cullin family.
    
 0.991
cops2
COP9 signalosome subunit 2.
    
  0.978
cops3
COP9 signalosome subunit 3.
    
  0.974
fnip1
Folliculin interacting protein 1.
    
 
 0.964
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.952
cops5
COP9 signalosome subunit 5.
    
 0.947
LOC108426597
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.945
LOC108435724
Elongin C paralog b; Belongs to the SKP1 family.
    
 0.945
cops8
COP9 signalosome subunit 8.
    
 0.935
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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