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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbpl2TATA box binding protein like 2. (311 aa)    
Predicted Functional Partners:
gtf2b
General transcription factor IIB.
   
 0.991
taf2
TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.982
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.982
LOC108431279
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.982
taf6
TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.982
taf7l
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.982
LOC108412743
TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.982
taf10
Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.
    
 0.982
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.981
LOC108412861
SANT domain-containing protein.
    
 0.981
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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