Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPNAP00000001672Si:dkey-225n22.4. (417 aa)    
Predicted Functional Partners:
LOC108439739
Si:ch211-157b11.8.
      
 0.710
col6a1
Collagen, type VI, alpha 1.
   
 0.612
LOC108412904
Uncharacterized protein.
    
  0.577
ren
Renin; Belongs to the peptidase A1 family.
      
 0.510
col6a2
Collagen, type VI, alpha 2.
   
 0.507
LOC108424166
Si:dkeyp-44a8.4.
 
    
 0.489
LOC108415502
Metalloendopeptidase.
    
 0.469
LOC108415939
Metalloendopeptidase.
    
 0.468
LOC108414649
Integrin, beta 4.
    
 0.444
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.444
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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