gadd45gip1 protein (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

gadd45gip1

Growth arrest and DNA-damage-inducible, gamma interacting protein 1. (228 aa)

Predicted Functional Partners:

mrpl40

0.992

mrpl41

0.990

mrpl42

0.990

mrpl11

0.989

MRPL49

0.987

mrpl58

0.984

mrpl24

0.983

mrpl30

0.982

mrpl20

0.982

mrpl28

0.980

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MRPL49	gadd45gip1	ENSPNAP00000036901	ENSPNAP00000001698	Mitochondrial ribosomal protein L49.	Growth arrest and DNA-damage-inducible, gamma interacting protein 1.	0.987
MRPL49	mrpl11	ENSPNAP00000036901	ENSPNAP00000032537	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.966
MRPL49	mrpl20	ENSPNAP00000036901	ENSPNAP00000011060	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.996
MRPL49	mrpl24	ENSPNAP00000036901	ENSPNAP00000001304	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.904
MRPL49	mrpl28	ENSPNAP00000036901	ENSPNAP00000024645	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L28.	0.960
MRPL49	mrpl30	ENSPNAP00000036901	ENSPNAP00000003465	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L30.	0.966
MRPL49	mrpl40	ENSPNAP00000036901	ENSPNAP00000000528	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L40.	0.980
MRPL49	mrpl41	ENSPNAP00000036901	ENSPNAP00000014446	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L41.	0.973
MRPL49	mrpl42	ENSPNAP00000036901	ENSPNAP00000014798	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L42.	0.931
MRPL49	mrpl58	ENSPNAP00000036901	ENSPNAP00000019190	Mitochondrial ribosomal protein L49.	Mitochondrial ribosomal protein L58.	0.918
gadd45gip1	MRPL49	ENSPNAP00000001698	ENSPNAP00000036901	Growth arrest and DNA-damage-inducible, gamma interacting protein 1.	Mitochondrial ribosomal protein L49.	0.987
gadd45gip1	mrpl11	ENSPNAP00000001698	ENSPNAP00000032537	Growth arrest and DNA-damage-inducible, gamma interacting protein 1.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.989
gadd45gip1	mrpl20	ENSPNAP00000001698	ENSPNAP00000011060	Growth arrest and DNA-damage-inducible, gamma interacting protein 1.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.982
gadd45gip1	mrpl24	ENSPNAP00000001698	ENSPNAP00000001304	Growth arrest and DNA-damage-inducible, gamma interacting protein 1.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.983
gadd45gip1	mrpl28	ENSPNAP00000001698	ENSPNAP00000024645	Growth arrest and DNA-damage-inducible, gamma interacting protein 1.	Mitochondrial ribosomal protein L28.	0.980
gadd45gip1	mrpl30	ENSPNAP00000001698	ENSPNAP00000003465	Growth arrest and DNA-damage-inducible, gamma interacting protein 1.	Mitochondrial ribosomal protein L30.	0.982
gadd45gip1	mrpl40	ENSPNAP00000001698	ENSPNAP00000000528	Growth arrest and DNA-damage-inducible, gamma interacting protein 1.	Mitochondrial ribosomal protein L40.	0.992
gadd45gip1	mrpl41	ENSPNAP00000001698	ENSPNAP00000014446	Growth arrest and DNA-damage-inducible, gamma interacting protein 1.	Mitochondrial ribosomal protein L41.	0.990
gadd45gip1	mrpl42	ENSPNAP00000001698	ENSPNAP00000014798	Growth arrest and DNA-damage-inducible, gamma interacting protein 1.	Mitochondrial ribosomal protein L42.	0.990
gadd45gip1	mrpl58	ENSPNAP00000001698	ENSPNAP00000019190	Growth arrest and DNA-damage-inducible, gamma interacting protein 1.	Mitochondrial ribosomal protein L58.	0.984