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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108443208Cadherin 16, KSP-cadherin. (799 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.776
LOC108414240
Catenin, beta 2.
    
 0.776
ctnnd1
Catenin (cadherin-associated protein), delta 1.
    
 0.755
arvcf
ARVCF delta catenin family member b.
    
 0.755
LOC108438667
Junction plakoglobin a.
    
 0.715
LOC108438403
Junction plakoglobin b.
    
 0.715
PKP4
Plakophilin 4.
    
 0.688
LOC108442264
Plakophilin 4.
    
 0.688
ctnnd2
Catenin (cadherin-associated protein), delta 2b.
    
 0.688
LOC108438556
Catenin (cadherin-associated protein), delta 2a.
    
 0.688
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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