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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPNAP00000001888Fibrillar collagen NC1 domain-containing protein. (109 aa)    
Predicted Functional Partners:
col6a2
Collagen, type VI, alpha 2.
   
 0.626
LOC108412904
Uncharacterized protein.
    
  0.617
LOC108414592
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
   
 0.609
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
 0.609
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
   
 0.609
LOC108435823
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a; Belongs to the serpin family.
    
 0.601
LOC108433001
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1b; Belongs to the serpin family.
    
 0.601
ppib
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.589
LOC108439166
Protein disulfide-isomerase.
    
  0.582
p4hb
Protein disulfide-isomerase.
    
  0.582
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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