LOC108441537 protein (Pygocentrus nattereri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC108441537

Si:ch211-149b19.3. (368 aa)

Predicted Functional Partners:

bckdhb

0.979

bckdha

0.971

dbt

0.958

LOC108411488

0.958

LOC108423915

0.843

traf7

0.727

wdr90

0.726

dld

0.681

ENSPNAP00000034707

0.681

ripk4

0.679

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNAP00000034707	LOC108411488	ENSPNAP00000034707	ENSPNAP00000035994	Pyr_redox_2 domain-containing protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.988
ENSPNAP00000034707	LOC108423915	ENSPNAP00000034707	ENSPNAP00000029043	Pyr_redox_2 domain-containing protein.	NME/NM23 family member 8; Belongs to the NDK family.	0.739
ENSPNAP00000034707	LOC108441537	ENSPNAP00000034707	ENSPNAP00000001903	Pyr_redox_2 domain-containing protein.	Si:ch211-149b19.3.	0.681
ENSPNAP00000034707	bckdha	ENSPNAP00000034707	ENSPNAP00000037991	Pyr_redox_2 domain-containing protein.	2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).	0.976
ENSPNAP00000034707	bckdhb	ENSPNAP00000034707	ENSPNAP00000018082	Pyr_redox_2 domain-containing protein.	Branched chain keto acid dehydrogenase E1 subunit beta.	0.992
ENSPNAP00000034707	dbt	ENSPNAP00000034707	ENSPNAP00000016091	Pyr_redox_2 domain-containing protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.988
LOC108411488	ENSPNAP00000034707	ENSPNAP00000035994	ENSPNAP00000034707	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Pyr_redox_2 domain-containing protein.	0.988
LOC108411488	LOC108441537	ENSPNAP00000035994	ENSPNAP00000001903	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Si:ch211-149b19.3.	0.958
LOC108411488	bckdha	ENSPNAP00000035994	ENSPNAP00000037991	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).	0.994
LOC108411488	bckdhb	ENSPNAP00000035994	ENSPNAP00000018082	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Branched chain keto acid dehydrogenase E1 subunit beta.	0.997
LOC108411488	dbt	ENSPNAP00000035994	ENSPNAP00000016091	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.903
LOC108411488	dld	ENSPNAP00000035994	ENSPNAP00000011020	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Dihydrolipoyl dehydrogenase.	0.991
LOC108411488	ripk4	ENSPNAP00000035994	ENSPNAP00000028816	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	Receptor-interacting serine-threonine kinase 4.	0.466
LOC108423915	ENSPNAP00000034707	ENSPNAP00000029043	ENSPNAP00000034707	NME/NM23 family member 8; Belongs to the NDK family.	Pyr_redox_2 domain-containing protein.	0.739
LOC108423915	LOC108441537	ENSPNAP00000029043	ENSPNAP00000001903	NME/NM23 family member 8; Belongs to the NDK family.	Si:ch211-149b19.3.	0.843
LOC108423915	dld	ENSPNAP00000029043	ENSPNAP00000011020	NME/NM23 family member 8; Belongs to the NDK family.	Dihydrolipoyl dehydrogenase.	0.739
LOC108423915	ripk4	ENSPNAP00000029043	ENSPNAP00000028816	NME/NM23 family member 8; Belongs to the NDK family.	Receptor-interacting serine-threonine kinase 4.	0.771
LOC108423915	wdr90	ENSPNAP00000029043	ENSPNAP00000027391	NME/NM23 family member 8; Belongs to the NDK family.	WD repeat domain 90.	0.951
LOC108441537	ENSPNAP00000034707	ENSPNAP00000001903	ENSPNAP00000034707	Si:ch211-149b19.3.	Pyr_redox_2 domain-containing protein.	0.681
LOC108441537	LOC108411488	ENSPNAP00000001903	ENSPNAP00000035994	Si:ch211-149b19.3.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.958