yipf6 protein (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

yipf6

Protein YIPF. (229 aa)

Predicted Functional Partners:

treh

0.990

gak

0.984

dnajc6

0.982

pgghg

0.973

alg2

0.959

otc

0.959

gbe1

0.957

LOC108410718

0.957

pudp

0.947

LOC108414029

0.939

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108410718	LOC108414029	ENSPNAP00000035307	ENSPNAP00000005807	Glucan (1,4-alpha-), branching enzyme 1a.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.989
LOC108410718	alg2	ENSPNAP00000035307	ENSPNAP00000019431	Glucan (1,4-alpha-), branching enzyme 1a.	ALG2 alpha-1,3/1,6-mannosyltransferase.	0.860
LOC108410718	otc	ENSPNAP00000035307	ENSPNAP00000023274	Glucan (1,4-alpha-), branching enzyme 1a.	Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.992
LOC108410718	pgghg	ENSPNAP00000035307	ENSPNAP00000037836	Glucan (1,4-alpha-), branching enzyme 1a.	Protein-glucosylgalactosylhydroxylysine glucosidase.	0.909
LOC108410718	pudp	ENSPNAP00000035307	ENSPNAP00000033678	Glucan (1,4-alpha-), branching enzyme 1a.	Pseudouridine 5'-phosphatase.	0.911
LOC108410718	treh	ENSPNAP00000035307	ENSPNAP00000029161	Glucan (1,4-alpha-), branching enzyme 1a.	Trehalase.	0.944
LOC108410718	yipf6	ENSPNAP00000035307	ENSPNAP00000001928	Glucan (1,4-alpha-), branching enzyme 1a.	Protein YIPF.	0.957
LOC108414029	LOC108410718	ENSPNAP00000005807	ENSPNAP00000035307	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Glucan (1,4-alpha-), branching enzyme 1a.	0.989
LOC108414029	gbe1	ENSPNAP00000005807	ENSPNAP00000003708	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Glucan (1,4-alpha-), branching enzyme 1b.	0.989
LOC108414029	otc	ENSPNAP00000005807	ENSPNAP00000023274	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.784
LOC108414029	pgghg	ENSPNAP00000005807	ENSPNAP00000037836	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Protein-glucosylgalactosylhydroxylysine glucosidase.	0.619
LOC108414029	pudp	ENSPNAP00000005807	ENSPNAP00000033678	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Pseudouridine 5'-phosphatase.	0.668
LOC108414029	treh	ENSPNAP00000005807	ENSPNAP00000029161	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Trehalase.	0.551
LOC108414029	yipf6	ENSPNAP00000005807	ENSPNAP00000001928	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Protein YIPF.	0.939
alg2	LOC108410718	ENSPNAP00000019431	ENSPNAP00000035307	ALG2 alpha-1,3/1,6-mannosyltransferase.	Glucan (1,4-alpha-), branching enzyme 1a.	0.860
alg2	gbe1	ENSPNAP00000019431	ENSPNAP00000003708	ALG2 alpha-1,3/1,6-mannosyltransferase.	Glucan (1,4-alpha-), branching enzyme 1b.	0.860
alg2	otc	ENSPNAP00000019431	ENSPNAP00000023274	ALG2 alpha-1,3/1,6-mannosyltransferase.	Ornithine carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.782
alg2	pgghg	ENSPNAP00000019431	ENSPNAP00000037836	ALG2 alpha-1,3/1,6-mannosyltransferase.	Protein-glucosylgalactosylhydroxylysine glucosidase.	0.594
alg2	pudp	ENSPNAP00000019431	ENSPNAP00000033678	ALG2 alpha-1,3/1,6-mannosyltransferase.	Pseudouridine 5'-phosphatase.	0.668
alg2	treh	ENSPNAP00000019431	ENSPNAP00000029161	ALG2 alpha-1,3/1,6-mannosyltransferase.	Trehalase.	0.486