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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108436799POU domain protein. (441 aa)    
Predicted Functional Partners:
sall4
Spalt-like transcription factor 4.
   
 0.964
sox2
SRY-box transcription factor 2.
    
 0.930
sox3
SRY-box transcription factor 3.
    
 0.874
LOC108443970
SRY-box transcription factor 19b.
    
 0.869
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.863
LOC108433563
Lin-28 homolog A.
   
 
 0.843
ENSPNAP00000011906
HMG box domain-containing protein.
    
 0.837
LOC108431466
SRY-box transcription factor 1a.
    
 0.833
SOX1
HMG box domain-containing protein.
    
 0.833
LOC108414240
Catenin, beta 2.
    
 0.823
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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