Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108440392SKI-like proto-oncogene b. (713 aa)    
Predicted Functional Partners:
LOC108410624
V-ski avian sarcoma viral oncogene homolog a.
    
  0.990
LOC108414765
MH2 domain-containing protein.
    
 0.969
LOC108435141
Mothers against decapentaplegic homolog.
    
 0.969
ENSPNAP00000021707
MH1 domain-containing protein.
    
 0.969
LOC108436572
Mothers against decapentaplegic homolog.
    
 0.969
LOC108441801
Mothers against decapentaplegic homolog.
    
 0.969
ncor1
Nuclear receptor corepressor 1.
   
 0.952
LOC108438537
SIN3 transcription regulator family member Ab.
    
 0.945
sin3a
SIN3 transcription regulator family member Aa.
    
 0.945
LOC108412761
Nuclear receptor corepressor 2.
   
 0.937
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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