Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ddx11DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11. (908 aa)    
Predicted Functional Partners:
chtf18
CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae).
   
 
 0.965
chtf8
CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae).
   
 
 0.955
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
    
 0.951
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 
 0.944
dscc1
DNA replication and sister chromatid cohesion 1.
   
 
 0.939
wdhd1
WD repeat and HMG-box DNA binding protein 1.
   
 
 0.928
LOC108424697
ATPase family AAA domain containing 5b.
   
 0.911
atad5
ATPase family AAA domain containing 5a.
   
 0.911
esco2
Establishment of sister chromatid cohesion N-acetyltransferase 2.
   
 
 0.910
esco1
Establishment of sister chromatid cohesion N-acetyltransferase 1.
   
 
 0.910
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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