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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYDE1Synapse defective Rho GTPase homolog 1. (944 aa)    
Predicted Functional Partners:
myo9b
Si:zfos-588f8.1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
0.684
LOC108413743
Myosin IXb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
0.684
myo9a
Myosin IXAa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
0.684
LOC108428387
Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
0.684
rasl11b
RAS-like, family 11, member B.
    
 0.621
arhgap1
Rho GTPase activating protein 1.
     
0.570
LOC108425170
Ras homolog family member F.
    
 0.540
ppp4r3a
SMEK homolog 1, suppressor of mek1 (Dictyostelium).
    
 
 0.524
iqgap3
IQ motif containing GTPase activating protein 3.
    
 0.515
iqgap2
IQ motif containing GTPase activating protein 2.
    
 0.515
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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