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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABCA5ATP binding cassette subfamily A member 5. (1678 aa)    
Predicted Functional Partners:
LOC108429917
Uncharacterized protein.
    
 0.626
LOC108429918
Uncharacterized protein.
    
 0.626
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
    
 0.593
LOC108437854
Cytochrome c oxidase assembly homolog 15 (yeast).
    
 0.579
LOC108438559
Nuclear receptor subfamily 1, group H, member 5.
    
 0.570
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
    
 0.570
atp5f1c
ATP synthase subunit gamma.
   
   0.503
LOC108424033
2-epi-5-epi-valiolone synthase.
     
 0.499
ENSPNAP00000031933
Si:ch211-153b23.3.
     
 0.499
atp5f1d
ATP synthase F1 subunit delta.
    
   0.485
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.