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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108437669Zgc:109982; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (299 aa)    
Predicted Functional Partners:
LOC108412396
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.859
LOC108430031
Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.857
LOC108436588
O-acyltransferase.
   
 
 0.854
LOC108439383
Lecithin retinol acyltransferase b, tandem duplicate 2.
     
 0.816
lrat
Lecithin retinol acyltransferase a.
    
 0.813
LOC108428768
Hydroxysteroid (17-beta) dehydrogenase 2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
0.794
bco1
Beta-carotene oxygenase 1.
   
 
 0.792
LOC108429012
Hydroxysteroid (20-beta) dehydrogenase 2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.778
hsd17b8
Hydroxysteroid (17-beta) dehydrogenase 8.
  
  
 0.769
LOC108439371
Lecithin retinol acyltransferase b, tandem duplicate 1.
    
 0.768
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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