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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108432054Uncharacterized protein. (607 aa)    
Predicted Functional Partners:
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
  
 
 0.882
ndufaf6
NADH:ubiquinone oxidoreductase complex assembly factor 6.
  
 
 0.868
LOC108439383
Lecithin retinol acyltransferase b, tandem duplicate 2.
     
 0.811
LOC108430031
Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.
    
 0.792
LOC108439707
Retinol dehydrogenase 12.
    
 0.788
LOC108439371
Lecithin retinol acyltransferase b, tandem duplicate 1.
     
 0.788
dhrs3
Dehydrogenase/reductase (SDR family) member 3a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.785
LOC108439496
Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.785
LOC108440044
Dehydrogenase/reductase (SDR family) member 4.
  
 
 0.783
LOC108412396
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
  
 
 0.781
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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