Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108436497Beta-carotene oxygenase 2b. (559 aa)    
Predicted Functional Partners:
LOC108439383
Lecithin retinol acyltransferase b, tandem duplicate 2.
     
 0.753
pnpla4
PNPLA domain-containing protein.
     
 0.670
asip
Agouti domain-containing protein.
      
 0.658
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.650
LOC108440044
Dehydrogenase/reductase (SDR family) member 4.
     
 0.637
stard3
StAR-related lipid transfer (START) domain containing 3.
      
 0.629
lrat
Lecithin retinol acyltransferase a.
     
 0.611
LOC108439371
Lecithin retinol acyltransferase b, tandem duplicate 1.
     
 0.611
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
     
 0.605
LOC108426594
Retinol dehydrogenase 10a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.603
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.