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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pnkdPNKD metallo-beta-lactamase domain containing. (361 aa)    
Predicted Functional Partners:
suox
Sulfite oxidase.
  
 
 0.963
LOC108428940
Cytochrome b5 reductase 4.
    
 0.896
park7
Parkinson protein 7.
    
 0.759
glod4
Glyoxalase domain containing 4.
  
 
 0.742
ldhd
Lactate dehydrogenase D.
    
 0.680
ybey
YbeY metalloendoribonuclease.
   
 
 0.675
hao2
Hydroxyacid oxidase 2 (long chain).
    
 0.662
hao1
Hydroxyacid oxidase (glycolate oxidase) 1.
    
 0.662
tstd3
Rhodanese domain-containing protein.
  
 0.638
LOC108431128
Rhodanese domain-containing protein.
  
 0.638
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.