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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108432554Si:dkey-31f5.11. (1151 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.887
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.841
LOC108422653
Ubiquitin.
    
 0.841
LOC108440049
NEDD8 ubiquitin like modifier.
   
 0.789
LOC108438931
NEDD8 ubiquitin like modifier, like.
   
 0.789
senp8
SUMO peptidase family member, NEDD8 specific.
    
 0.726
zfand4
Zinc finger, AN1-type domain 4.
    
 0.710
uba3
Ubiquitin-like modifier activating enzyme 3.
   
 0.707
LOC108435248
E2_bind domain-containing protein.
   
 0.707
ENSPNAP00000002548
ISG15 ubiquitin like modifier.
    
 0.703
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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