Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dixdc1DIX domain containing 1a. (445 aa)    
Predicted Functional Partners:
LOC108430325
NudE neurodevelopment protein 1-like 1a.
    
 
 0.788
nde1
NudE neurodevelopment protein 1.
    
 
 0.788
LOC108432229
NudE neurodevelopment protein 1-like 1b.
    
 
 0.788
cdk13
Cyclin-dependent kinase 13.
    
 
 0.622
cdk12
Cyclin-dependent kinase 12.
    
 
 0.622
alyref
Aly/REF export factor.
   
   0.569
poldip3
Polymerase (DNA-directed), delta interacting protein 3.
   
   0.569
usp1
Ubiquitin carboxyl-terminal hydrolase.
   
  
 0.537
coq4
Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial; Component of the coenzyme Q biosynthetic pathway. May play a role in organizing a multi-subunit COQ enzyme complex required for coenzyme Q biosynthesis. Required for steady-state levels of other COQ polypeptides; Belongs to the COQ4 family.
      
 0.519
LOC108438482
Deoxyguanosine kinase.
      
 0.514
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
Server load: medium (44%) [HD]