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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dixdc1DIX domain containing 1a. (445 aa)    
Predicted Functional Partners:
cdk13
Cyclin-dependent kinase 13.
    
 
 0.656
cdk12
Cyclin-dependent kinase 12.
    
 
 0.656
CCNK
Cyclin K; Belongs to the cyclin family.
    
 
 0.539
ccnq
Cyclin Q; Belongs to the cyclin family.
    
 
 0.539
ccnt2
Cyclin T2b; Belongs to the cyclin family.
    
 
 0.539
ccnt1
Cyclin T1; Belongs to the cyclin family.
    
 
 0.539
LOC108425957
Cyclin T2a; Belongs to the cyclin family.
    
 
 0.539
disc1
DISC1 scaffold protein.
    
 
 0.534
LOC108433510
Amine oxidase.
    
   0.465
KDM1B
Lysine demethylase 1B.
    
   0.465
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.