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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nphs1NPHS1 adhesion molecule, nephrin. (1249 aa)    
Predicted Functional Partners:
LOC108440472
Kirre like nephrin family adhesion molecule 3, like.
   
0.955
LOC108428281
Kirre like nephrin family adhesion molecule 1b.
   
0.954
LOC108433245
Kirre like nephrin family adhesion molecule 3a.
   
0.954
KIRREL3
Kirre like nephrin family adhesion molecule 3.
   
0.954
LOC108440115
Kirre like nephrin family adhesion molecule 1a.
   
0.954
sh3kbp1
SH3-domain kinase binding protein 1.
    
 0.812
cd2ap
CD2-associated protein.
    
 0.812
sh3d21
SH3 domain containing 21.
    
 0.812
LOC108437671
Cytoplasmic protein.
    
 0.791
nck2
Cytoplasmic protein.
    
 0.791
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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