usp30 protein (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

usp30

Ubiquitin carboxyl-terminal hydrolase. (504 aa)

Predicted Functional Partners:

rps27a

0.986

uba52

0.978

ENSPNAP00000003651

0.974

trrap

0.927

tada3

0.920

taf10

0.920

LOC108431279

0.912

eny2

0.885

tada2b

0.883

sgf29

0.878

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNAP00000003651	LOC108431279	ENSPNAP00000003651	ENSPNAP00000010265	Ubiquitin-like domain-containing protein.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.943
ENSPNAP00000003651	eny2	ENSPNAP00000003651	ENSPNAP00000004904	Ubiquitin-like domain-containing protein.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.922
ENSPNAP00000003651	rps27a	ENSPNAP00000003651	ENSPNAP00000008071	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.999
ENSPNAP00000003651	tada2b	ENSPNAP00000003651	ENSPNAP00000028667	Ubiquitin-like domain-containing protein.	Transcriptional adapter.	0.617
ENSPNAP00000003651	tada3	ENSPNAP00000003651	ENSPNAP00000009735	Ubiquitin-like domain-containing protein.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.879
ENSPNAP00000003651	taf10	ENSPNAP00000003651	ENSPNAP00000034652	Ubiquitin-like domain-containing protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.888
ENSPNAP00000003651	trrap	ENSPNAP00000003651	ENSPNAP00000003588	Ubiquitin-like domain-containing protein.	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.914
ENSPNAP00000003651	uba52	ENSPNAP00000003651	ENSPNAP00000019133	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSPNAP00000003651	usp30	ENSPNAP00000003651	ENSPNAP00000002641	Ubiquitin-like domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.974
LOC108431279	ENSPNAP00000003651	ENSPNAP00000010265	ENSPNAP00000003651	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Ubiquitin-like domain-containing protein.	0.943
LOC108431279	eny2	ENSPNAP00000010265	ENSPNAP00000004904	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	0.983
LOC108431279	rps27a	ENSPNAP00000010265	ENSPNAP00000008071	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Ribosomal protein S27a.	0.917
LOC108431279	sgf29	ENSPNAP00000010265	ENSPNAP00000009078	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SAGA complex associated factor 29.	0.998
LOC108431279	tada2b	ENSPNAP00000010265	ENSPNAP00000028667	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcriptional adapter.	0.981
LOC108431279	tada3	ENSPNAP00000010265	ENSPNAP00000009735	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.999
LOC108431279	taf10	ENSPNAP00000010265	ENSPNAP00000034652	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
LOC108431279	trrap	ENSPNAP00000010265	ENSPNAP00000003588	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.999
LOC108431279	uba52	ENSPNAP00000010265	ENSPNAP00000019133	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.873
LOC108431279	usp30	ENSPNAP00000010265	ENSPNAP00000002641	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Ubiquitin carboxyl-terminal hydrolase.	0.912
eny2	ENSPNAP00000003651	ENSPNAP00000004904	ENSPNAP00000003651	Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]	Ubiquitin-like domain-containing protein.	0.922