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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108435409EWS RNA-binding protein 1a. (643 aa)    
Predicted Functional Partners:
hnrnpm
Heterogeneous nuclear ribonucleoprotein M.
   
 0.898
tardbp
TAR DNA binding protein, like.
   
 0.795
LOC108427558
TAR DNA binding protein.
   
 0.795
LOC108443858
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.793
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.793
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 
 0.752
LOC108430244
Serine and arginine rich splicing factor 2a.
   
 0.746
taf12
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
  0.714
srsf3
Serine and arginine rich splicing factor 3.
   
 0.710
LOC108413700
Serine and arginine rich splicing factor 3a.
   
 0.710
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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