RSBN1L protein (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RSBN1L

Round spermatid basic protein 1 like. (996 aa)

Predicted Functional Partners:

dpy30

0.536

ncapd2

0.491

smc4

0.423

smc2

0.414

bcas2

0.412

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RSBN1L	bcas2	ENSPNAP00000002966	ENSPNAP00000010195	Round spermatid basic protein 1 like.	BCAS2 pre-mRNA processing factor.	0.412
RSBN1L	dpy30	ENSPNAP00000002966	ENSPNAP00000028751	Round spermatid basic protein 1 like.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.536
RSBN1L	ncapd2	ENSPNAP00000002966	ENSPNAP00000033048	Round spermatid basic protein 1 like.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.491
RSBN1L	smc2	ENSPNAP00000002966	ENSPNAP00000001939	Round spermatid basic protein 1 like.	Structural maintenance of chromosomes protein.	0.414
RSBN1L	smc4	ENSPNAP00000002966	ENSPNAP00000024607	Round spermatid basic protein 1 like.	Structural maintenance of chromosomes protein.	0.423
bcas2	RSBN1L	ENSPNAP00000010195	ENSPNAP00000002966	BCAS2 pre-mRNA processing factor.	Round spermatid basic protein 1 like.	0.412
dpy30	RSBN1L	ENSPNAP00000028751	ENSPNAP00000002966	Dpy-30 histone methyltransferase complex regulatory subunit.	Round spermatid basic protein 1 like.	0.536
dpy30	ncapd2	ENSPNAP00000028751	ENSPNAP00000033048	Dpy-30 histone methyltransferase complex regulatory subunit.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.611
dpy30	smc2	ENSPNAP00000028751	ENSPNAP00000001939	Dpy-30 histone methyltransferase complex regulatory subunit.	Structural maintenance of chromosomes protein.	0.471
dpy30	smc4	ENSPNAP00000028751	ENSPNAP00000024607	Dpy-30 histone methyltransferase complex regulatory subunit.	Structural maintenance of chromosomes protein.	0.604
ncapd2	RSBN1L	ENSPNAP00000033048	ENSPNAP00000002966	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Round spermatid basic protein 1 like.	0.491
ncapd2	dpy30	ENSPNAP00000033048	ENSPNAP00000028751	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.611
ncapd2	smc2	ENSPNAP00000033048	ENSPNAP00000001939	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Structural maintenance of chromosomes protein.	0.999
ncapd2	smc4	ENSPNAP00000033048	ENSPNAP00000024607	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	Structural maintenance of chromosomes protein.	0.999
smc2	RSBN1L	ENSPNAP00000001939	ENSPNAP00000002966	Structural maintenance of chromosomes protein.	Round spermatid basic protein 1 like.	0.414
smc2	dpy30	ENSPNAP00000001939	ENSPNAP00000028751	Structural maintenance of chromosomes protein.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.471
smc2	ncapd2	ENSPNAP00000001939	ENSPNAP00000033048	Structural maintenance of chromosomes protein.	Condensin complex subunit 1; Regulatory subunit of the condensin complex, a complex required for conversion of interphase chromatin into mitotic-like condense chromosomes. The condensin complex probably introduces positive supercoils into relaxed DNA in the presence of type I topoisomerases and converts nicked DNA into positive knotted forms in the presence of type II topoisomerases.	0.999
smc2	smc4	ENSPNAP00000001939	ENSPNAP00000024607	Structural maintenance of chromosomes protein.	Structural maintenance of chromosomes protein.	0.999
smc4	RSBN1L	ENSPNAP00000024607	ENSPNAP00000002966	Structural maintenance of chromosomes protein.	Round spermatid basic protein 1 like.	0.423
smc4	dpy30	ENSPNAP00000024607	ENSPNAP00000028751	Structural maintenance of chromosomes protein.	Dpy-30 histone methyltransferase complex regulatory subunit.	0.604