rad23b protein (Pygocentrus nattereri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

rad23b

RAD23 homolog B, nucleotide excision repair protein. (381 aa)

Predicted Functional Partners:

mysm1

0.994

xpc

0.971

ngly1

0.969

psmd4

0.962

uba52

0.961

psmd2

0.956

ENSPNAP00000003651

0.950

psmd14

0.935

LOC108437991

0.932

LOC108413416

0.932

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNAP00000003651	LOC108413416	ENSPNAP00000003651	ENSPNAP00000016068	Ubiquitin-like domain-containing protein.	NBR1 autophagy cargo receptor a.	0.947
ENSPNAP00000003651	LOC108437991	ENSPNAP00000003651	ENSPNAP00000008215	Ubiquitin-like domain-containing protein.	NBR1 autophagy cargo receptor b.	0.947
ENSPNAP00000003651	mysm1	ENSPNAP00000003651	ENSPNAP00000022196	Ubiquitin-like domain-containing protein.	Myb-like, SWIRM and MPN domains 1.	0.995
ENSPNAP00000003651	ngly1	ENSPNAP00000003651	ENSPNAP00000016787	Ubiquitin-like domain-containing protein.	N-glycanase 1.	0.869
ENSPNAP00000003651	psmd14	ENSPNAP00000003651	ENSPNAP00000028224	Ubiquitin-like domain-containing protein.	Proteasome 26S subunit, non-ATPase 14.	0.996
ENSPNAP00000003651	psmd2	ENSPNAP00000003651	ENSPNAP00000025195	Ubiquitin-like domain-containing protein.	26S proteasome non-ATPase regulatory subunit 2; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S2 family.	0.984
ENSPNAP00000003651	psmd4	ENSPNAP00000003651	ENSPNAP00000000690	Ubiquitin-like domain-containing protein.	Proteasome 26S subunit, non-ATPase 4a.	0.997
ENSPNAP00000003651	rad23b	ENSPNAP00000003651	ENSPNAP00000002981	Ubiquitin-like domain-containing protein.	RAD23 homolog B, nucleotide excision repair protein.	0.950
ENSPNAP00000003651	uba52	ENSPNAP00000003651	ENSPNAP00000019133	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.999
ENSPNAP00000003651	xpc	ENSPNAP00000003651	ENSPNAP00000031862	Ubiquitin-like domain-containing protein.	Xeroderma pigmentosum, complementation group C.	0.887
LOC108413416	ENSPNAP00000003651	ENSPNAP00000016068	ENSPNAP00000003651	NBR1 autophagy cargo receptor a.	Ubiquitin-like domain-containing protein.	0.947
LOC108413416	LOC108437991	ENSPNAP00000016068	ENSPNAP00000008215	NBR1 autophagy cargo receptor a.	NBR1 autophagy cargo receptor b.	0.997
LOC108413416	psmd4	ENSPNAP00000016068	ENSPNAP00000000690	NBR1 autophagy cargo receptor a.	Proteasome 26S subunit, non-ATPase 4a.	0.700
LOC108413416	rad23b	ENSPNAP00000016068	ENSPNAP00000002981	NBR1 autophagy cargo receptor a.	RAD23 homolog B, nucleotide excision repair protein.	0.932
LOC108413416	uba52	ENSPNAP00000016068	ENSPNAP00000019133	NBR1 autophagy cargo receptor a.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.971
LOC108437991	ENSPNAP00000003651	ENSPNAP00000008215	ENSPNAP00000003651	NBR1 autophagy cargo receptor b.	Ubiquitin-like domain-containing protein.	0.947
LOC108437991	LOC108413416	ENSPNAP00000008215	ENSPNAP00000016068	NBR1 autophagy cargo receptor b.	NBR1 autophagy cargo receptor a.	0.997
LOC108437991	psmd4	ENSPNAP00000008215	ENSPNAP00000000690	NBR1 autophagy cargo receptor b.	Proteasome 26S subunit, non-ATPase 4a.	0.700
LOC108437991	rad23b	ENSPNAP00000008215	ENSPNAP00000002981	NBR1 autophagy cargo receptor b.	RAD23 homolog B, nucleotide excision repair protein.	0.932
LOC108437991	uba52	ENSPNAP00000008215	ENSPNAP00000019133	NBR1 autophagy cargo receptor b.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.971