Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
armc2Armadillo repeat containing 2. (836 aa)    
Predicted Functional Partners:
WDR63
WD repeat domain 63.
      
 0.855
LOC108415284
Uncharacterized protein.
      
 0.803
cep78
Centrosomal protein 78.
      
 0.764
ttc21a
Tetratricopeptide repeat domain 21A.
      
 0.758
ttc29
Tetratricopeptide repeat domain 29.
      
 0.756
cfap58
Cilia and flagella associated protein 58.
      
 0.733
spef2
Sperm flagellar 2.
   
 
 0.715
cdt1
Chromatin licensing and DNA replication factor 1.
      
 0.712
ARMC6
Armadillo repeat containing 6.
      
 0.710
shq1
SHQ1, H/ACA ribonucleoprotein assembly factor.
      
 0.708
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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