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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
criptCysteine-rich PDZ-binding protein. (101 aa)    
Predicted Functional Partners:
armc7
Armadillo repeat containing 7.
    
 
 0.889
phf5a
PHD finger protein 5A.
   
   0.868
sf3b1
Splicing factor 3b, subunit 1.
    
   0.865
prpf8
Pre-mRNA processing factor 8.
    
   0.865
sf3b3
Splicing factor 3b, subunit 3.
    
   0.865
sf3b2
Splicing factor 3b, subunit 2.
    
   0.865
rnf113a
Ring finger protein 113A.
    
   0.865
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
    
 
 0.726
LOC108413879
CWC15 spliceosome associated protein homolog.
   
   0.720
rbm48
RNA binding motif protein 48.
   
 
 0.718
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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