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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
foxd3Forkhead box D3. (417 aa)    
Predicted Functional Partners:
suox
Sulfite oxidase.
     
 0.721
LOC108439670
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.718
sox10
SRY-box transcription factor 10.
   
 0.695
brpf1
Uncharacterized protein.
      
 0.666
zic1
Zic family member 1 (odd-paired homolog, Drosophila).
    
 0.617
LOC108424034
Melanocyte inducing transcription factor a.
    
 
 0.581
snai2
Snail family zinc finger 2.
   
  
 0.564
tfap2a
Transcription factor AP-2 alpha.
      
 0.561
msx1
Muscle segment homeobox 1a.
   
  
 0.545
sgk3
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
 0.541
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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