Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC108440335GATA binding protein 1a. (392 aa)    
Predicted Functional Partners:
tal1
T-cell acute lymphocytic leukemia 1.
   
 0.992
zfpm1
Zinc finger protein, FOG family member 1.
   
 0.990
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.989
LOC108430805
Spi-1 proto-oncogene b.
    
 0.980
LOC108429862
Runt-related transcription factor.
    
 0.948
fli1
Fli-1 proto-oncogene, ETS transcription factor a.
    
 0.946
myb
V-myb avian myeloblastosis viral oncogene homolog.
   
 0.892
LOC108430942
NK2 homeobox 5.
   
 0.853
LOC108442788
LIM domain binding 1a.
    
 0.827
zfpm2
Zinc finger protein, FOG family member 2a.
    
 0.827
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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