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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mitd1MIT, microtubule interacting and transport, domain containing 1. (246 aa)    
Predicted Functional Partners:
ENSPNAP00000004411
Uncharacterized protein.
    
 
 0.839
chmp1a
Charged multivesicular body protein 1A.
    
 
 0.839
chmp1b
Chromatin modifying protein 1B.
    
 
 0.839
chmp2a
Charged multivesicular body protein 2A.
    
 
 0.683
LOC108432044
Peptidoglycan recognition protein 6.
      
 0.664
akap17a
A kinase (PRKA) anchor protein 17A.
      
 0.658
ids
Iduronate 2-sulfatase.
      
 0.595
mrpl30
Mitochondrial ribosomal protein L30.
      
 0.585
txndc9
Thioredoxin domain containing 9.
      
 0.584
LOC108440659
Charged multivesicular body protein 5a.
    
 
 0.578
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.