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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPNAP00000003471Zinc finger protein 804B. (94 aa)    
Predicted Functional Partners:
ddx10
RNA helicase.
    
 0.727
nol6
Nucleolar protein 6.
    
 
 0.700
utp6
UTP6 small subunit processome component.
    
 
 0.696
bysl
Bystin-like.
    
 
 0.688
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
 0.687
rrp36
Ribosomal RNA processing 36.
   
   0.686
utp3
UTP3 small subunit processome component.
    
   0.683
utp25
UTP25 small subunit processor component.
    
   0.683
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
    
   0.683
krr1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
    
   0.683
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.