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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108429862Runt-related transcription factor. (511 aa)    
Predicted Functional Partners:
mysm1
Myb-like, SWIRM and MPN domains 1.
    
 0.982
cbfb
Core-binding factor subunit beta.
    
 0.962
LOC108430805
Spi-1 proto-oncogene b.
   
 0.899
tal1
T-cell acute lymphocytic leukemia 1.
    
 0.890
gata3
GATA binding protein 3.
    
 0.853
gata2
GATA binding protein 2a.
    
 0.842
lmo2
LIM domain only 2 (rhombotin-like 1).
     
 0.837
LOC108440335
GATA binding protein 1a.
    
 0.835
myb
V-myb avian myeloblastosis viral oncogene homolog.
     
 0.835
runx1t1
RUNX1 partner transcriptional co-repressor 1.
    
 0.812
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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