LOC108433748 protein (Pygocentrus nattereri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC108433748

Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily. (429 aa)

Predicted Functional Partners:

ENSPNAP00000016200

0.933

ctnnb1

0.884

LOC108414240

0.884

axin1

0.879

LOC108414501

0.879

apc

0.873

apc2

0.873

LOC108437161

0.864

AXIN2

0.864

LOC108438667

0.848

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AXIN2	ENSPNAP00000016200	ENSPNAP00000037751	ENSPNAP00000016200	Axin 2.	Glycogen synthase kinase binding protein.	0.628
AXIN2	LOC108414240	ENSPNAP00000037751	ENSPNAP00000022729	Axin 2.	Catenin, beta 2.	0.964
AXIN2	LOC108414501	ENSPNAP00000037751	ENSPNAP00000035143	Axin 2.	DIX domain-containing protein.	0.838
AXIN2	LOC108433748	ENSPNAP00000037751	ENSPNAP00000003610	Axin 2.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.864
AXIN2	LOC108437161	ENSPNAP00000037751	ENSPNAP00000022258	Axin 2.	Axin 2 (conductin, axil).	0.872
AXIN2	LOC108438667	ENSPNAP00000037751	ENSPNAP00000026616	Axin 2.	Junction plakoglobin a.	0.845
AXIN2	apc	ENSPNAP00000037751	ENSPNAP00000031680	Axin 2.	APC regulator of WNT signaling pathway.	0.967
AXIN2	apc2	ENSPNAP00000037751	ENSPNAP00000034594	Axin 2.	APC regulator of WNT signaling pathway 2.	0.967
AXIN2	axin1	ENSPNAP00000037751	ENSPNAP00000004549	Axin 2.	Axin 1.	0.838
AXIN2	ctnnb1	ENSPNAP00000037751	ENSPNAP00000014953	Axin 2.	Catenin (cadherin-associated protein), beta 1.	0.967
ENSPNAP00000016200	AXIN2	ENSPNAP00000016200	ENSPNAP00000037751	Glycogen synthase kinase binding protein.	Axin 2.	0.628
ENSPNAP00000016200	LOC108414240	ENSPNAP00000016200	ENSPNAP00000022729	Glycogen synthase kinase binding protein.	Catenin, beta 2.	0.635
ENSPNAP00000016200	LOC108414501	ENSPNAP00000016200	ENSPNAP00000035143	Glycogen synthase kinase binding protein.	DIX domain-containing protein.	0.628
ENSPNAP00000016200	LOC108433748	ENSPNAP00000016200	ENSPNAP00000003610	Glycogen synthase kinase binding protein.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.933
ENSPNAP00000016200	LOC108437161	ENSPNAP00000016200	ENSPNAP00000022258	Glycogen synthase kinase binding protein.	Axin 2 (conductin, axil).	0.628
ENSPNAP00000016200	LOC108438667	ENSPNAP00000016200	ENSPNAP00000026616	Glycogen synthase kinase binding protein.	Junction plakoglobin a.	0.545
ENSPNAP00000016200	apc	ENSPNAP00000016200	ENSPNAP00000031680	Glycogen synthase kinase binding protein.	APC regulator of WNT signaling pathway.	0.667
ENSPNAP00000016200	apc2	ENSPNAP00000016200	ENSPNAP00000034594	Glycogen synthase kinase binding protein.	APC regulator of WNT signaling pathway 2.	0.667
ENSPNAP00000016200	axin1	ENSPNAP00000016200	ENSPNAP00000004549	Glycogen synthase kinase binding protein.	Axin 1.	0.628
ENSPNAP00000016200	ctnnb1	ENSPNAP00000016200	ENSPNAP00000014953	Glycogen synthase kinase binding protein.	Catenin (cadherin-associated protein), beta 1.	0.635