LOC108433748 protein (Pygocentrus nattereri)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC108433748

Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily. (429 aa)

Predicted Functional Partners:

ENSPNAP00000016200

0.963

csnk1a1

0.952

ctnnb1

0.942

LOC108414240

0.942

tsc2

0.941

apc

0.928

apc2

0.928

LOC108438591

0.903

LOC108423477

0.903

axin1

0.900

Your Current Organism:

Pygocentrus nattereri

NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPNAP00000016200	LOC108414240	ENSPNAP00000016200	ENSPNAP00000022729	Glycogen synthase kinase binding protein.	Catenin, beta 2.	0.672
ENSPNAP00000016200	LOC108433748	ENSPNAP00000016200	ENSPNAP00000003610	Glycogen synthase kinase binding protein.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.963
ENSPNAP00000016200	apc	ENSPNAP00000016200	ENSPNAP00000031680	Glycogen synthase kinase binding protein.	APC regulator of WNT signaling pathway.	0.854
ENSPNAP00000016200	apc2	ENSPNAP00000016200	ENSPNAP00000034594	Glycogen synthase kinase binding protein.	APC regulator of WNT signaling pathway 2.	0.854
ENSPNAP00000016200	axin1	ENSPNAP00000016200	ENSPNAP00000004549	Glycogen synthase kinase binding protein.	Axin 1.	0.724
ENSPNAP00000016200	csnk1a1	ENSPNAP00000016200	ENSPNAP00000016642	Glycogen synthase kinase binding protein.	Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.	0.709
ENSPNAP00000016200	ctnnb1	ENSPNAP00000016200	ENSPNAP00000014953	Glycogen synthase kinase binding protein.	Catenin (cadherin-associated protein), beta 1.	0.672
LOC108414240	ENSPNAP00000016200	ENSPNAP00000022729	ENSPNAP00000016200	Catenin, beta 2.	Glycogen synthase kinase binding protein.	0.672
LOC108414240	LOC108423477	ENSPNAP00000022729	ENSPNAP00000025716	Catenin, beta 2.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.984
LOC108414240	LOC108433748	ENSPNAP00000022729	ENSPNAP00000003610	Catenin, beta 2.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.942
LOC108414240	LOC108438591	ENSPNAP00000022729	ENSPNAP00000009010	Catenin, beta 2.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.974
LOC108414240	apc	ENSPNAP00000022729	ENSPNAP00000031680	Catenin, beta 2.	APC regulator of WNT signaling pathway.	0.991
LOC108414240	apc2	ENSPNAP00000022729	ENSPNAP00000034594	Catenin, beta 2.	APC regulator of WNT signaling pathway 2.	0.991
LOC108414240	axin1	ENSPNAP00000022729	ENSPNAP00000004549	Catenin, beta 2.	Axin 1.	0.978
LOC108414240	csnk1a1	ENSPNAP00000022729	ENSPNAP00000016642	Catenin, beta 2.	Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.	0.991
LOC108414240	ctnnb1	ENSPNAP00000022729	ENSPNAP00000014953	Catenin, beta 2.	Catenin (cadherin-associated protein), beta 1.	0.935
LOC108423477	LOC108414240	ENSPNAP00000025716	ENSPNAP00000022729	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Catenin, beta 2.	0.984
LOC108423477	LOC108433748	ENSPNAP00000025716	ENSPNAP00000003610	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Glycogen synthase kinase 3 alpha a; Belongs to the protein kinase superfamily.	0.903
LOC108423477	LOC108438591	ENSPNAP00000025716	ENSPNAP00000009010	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.961
LOC108423477	ctnnb1	ENSPNAP00000025716	ENSPNAP00000014953	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	Catenin (cadherin-associated protein), beta 1.	0.986