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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cxcr4Chemokine (C-X-C motif), receptor 4b; Belongs to the G-protein coupled receptor 1 family. (395 aa)    
Predicted Functional Partners:
cxcl12
Chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.
   
 0.975
LOC108440693
Chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1); Belongs to the intercrine alpha (chemokine CxC) family.
   
 0.969
CXCL8
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
   
 
 0.920
cxcl14
Chemokine (C-X-C motif) ligand 14.
    
 0.917
ackr3
Atypical chemokine receptor 3b; Belongs to the G-protein coupled receptor 1 family.
    
0.909
LOC108438014
Guanine nucleotide binding protein (G protein), alpha 13b.
    
 0.909
LOC108444258
Guanine nucleotide binding protein (G protein), alpha 13a.
    
 0.909
gna12
Guanine nucleotide binding protein (G protein) alpha 12a.
    
 0.909
LOC108436884
Atypical chemokine receptor 3a; Belongs to the G-protein coupled receptor 1 family.
    
0.909
LOC108431693
C-C motif chemokine.
   
 0.900
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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