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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx6DEAD (Asp-Glu-Ala-Asp) box helicase 6. (425 aa)    
Predicted Functional Partners:
edc3
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
   
 0.970
lsm1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.969
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
 0.967
patl1
PAT1 homolog 1, processing body mRNA decay factor.
   
 0.965
cnot1
CCR4-NOT transcription complex, subunit 1.
   
 0.957
ENSPNAP00000017508
Decapping mRNA 1B.
   
 0.953
dcp2
Decapping mRNA 2.
   
 0.952
dcp1a
Decapping mRNA 1A.
   
 0.945
patl2
PAT1 homolog 2.
   
 0.944
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
  
 0.929
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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