close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dclre1bDNA cross-link repair 1B. (586 aa)    
Predicted Functional Partners:
cpsf1
Cleavage and polyadenylation specific factor 1.
   
 0.923
xrcc5
X-ray repair complementing defective repair in Chinese hamster cells 5.
    
 0.918
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
   
 0.913
sympk
Symplekin.
   
 0.908
ints4
Integrator complex subunit 4.
   
 0.892
fancm
Uncharacterized protein.
    
 0.887
pcf11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.876
ENSPNAP00000029884
WD repeat domain 82.
    
 0.868
cstf1
Cleavage stimulation factor, 3' pre-RNA, subunit 1.
   
 0.867
ints1
Integrator complex subunit 1.
    
 0.858
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
Server load: high (82%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.