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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
use1Unconventional SNARE in the ER 1 homolog (S. cerevisiae). (263 aa)    
Predicted Functional Partners:
stx18
Syntaxin 18.
    
 0.999
snx15
Sorting nexin 15.
    
 0.994
rps6kc1
Ribosomal protein S6 kinase polypeptide 1.
    
 0.994
rint1
RAD50 interactor 1.
    
 0.991
LOC108442060
Neuroblastoma amplified sequence.
    
 0.991
LOC108439390
SEC22 homolog B, vesicle trafficking protein (gene/pseudogene); Belongs to the synaptobrevin family.
    
 0.991
zw10
Zw10 kinetochore protein.
    
 0.990
gosr2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.964
sec22c
SEC22 homolog C, vesicle trafficking protein; Belongs to the synaptobrevin family.
    
 0.957
sec22a
SEC22 homolog A, vesicle trafficking protein; Belongs to the synaptobrevin family.
    
 0.957
Your Current Organism:
Pygocentrus nattereri
NCBI taxonomy Id: 42514
Other names: P. nattereri, Serrasalmus nattereri, red piranha, red-bellied piranha
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